sequences=8
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2XDB-G4-G19
X
>2ZJR-X1584-X1860
X
>2HOM-A33-A11
X
>2J03-A1970-A2492
X
>3R8S-A2699-A2694
X
>2QA4-0360-0265
X
>1NJI-A2101-A2092
X
>3U5D-12446-12404
X
</seq>
<hsp>
0 1:0.515133980399
0 2:0.666218418912
0 3:0.849788086091
0 4:0.433286651915
0 5:0.698392998743
0 6:0.44127386419
0 7:0.551515698604
1 2:0.720668001362
1 3:0.810902503796
1 4:0.686924136887
1 5:0.960450724202
1 6:0.633288839556
1 7:0.767784005782
2 3:0.999996311413
2 4:0.740459894262
2 5:0.730005644381
2 6:0.600793576166
2 7:0.522301873608
3 4:0.709936244884
3 5:0.847490665886
3 6:0.790036394006
3 7:0.826195693022
4 5:0.424301366016
4 6:0.235979722816
4 7:0.404535854414
5 6:0.41688824204
5 7:0.338877872716
6 7:0.252829464895
</hsp>