sequences=6
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3LWQ-D10-E11
X
>3CCS-01153-01164
X
>1YYO-F5-E6
X
>3CC4-01153-01164
X
>3CCR-0290-0337
X
>3OHC-A129-A213
X
</seq>
<hsp>
0 1:0.534834738959
0 2:0.888761179419
0 3:0.991151373334
0 4:1.0
0 5:0.897872198324
1 2:0.5782193965
1 3:0.508850304457
1 4:0.727450151742
1 5:0.636554913953
2 3:0.491421636854
2 4:0.246355834978
2 5:0.216313975507
3 4:0.595641550671
3 5:0.508392671365
4 5:0.250135446362
</hsp>