sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3OGY-A662-A684
X
>2VQE-A662-A684
X
>3OGE-A662-A684
X
>2VQF-A662-A684
X
>2UXC-A662-A684
X
>1N32-A662-A684
X
>2UUA-A662-A684
X
>1XMQ-A662-A684
X
>2UUB-A662-A684
X
>1FJG-A662-A684
X
</seq>
<hsp>
0 1:0.979070138443
0 2:0.071406872818
0 3:0.989132960012
0 4:0.94372168204
0 5:0.945327728536
0 6:0.990535240536
0 7:1.0
0 8:0.843750817772
0 9:0.822879686908
1 2:0.950295530388
1 3:0.173928880621
1 4:0.566030567709
1 5:0.537728336835
1 6:0.457271297128
1 7:0.486801367186
1 8:0.52655698353
1 9:0.460393916772
2 3:0.958466378323
2 4:0.928566346225
2 5:0.930275360713
2 6:0.975377821444
2 7:0.986750649399
2 8:0.836218481135
2 9:0.80429458678
3 4:0.611747979669
3 5:0.565084068512
3 6:0.496547729389
3 7:0.502361438347
3 8:0.530398637144
3 9:0.423682548676
4 5:0.0919660545078
4 6:0.201779479614
4 7:0.293962777
4 8:0.275375370674
4 9:0.361753421668
5 6:0.171826974151
5 7:0.252951391554
5 8:0.226293859318
5 9:0.300942525612
6 7:0.128509136231
6 8:0.213448194532
6 9:0.312143824071
7 8:0.200941248586
7 9:0.322744118647
8 9:0.221977184254
</hsp>