sequences=8
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3CCR-0608-0623
X
>3CCJ-0608-0623
X
>3F1G-A653-A693
X
>3I56-0608-0623
X
>3F1E-A653-A693
X
>3CME-0608-0623
X
>3U5F-6473-6507
X
>1N32-A653-A693
X
</seq>
<hsp>
0 1:0.378905490357
0 2:0.682030959847
0 3:0.272425477893
0 4:0.677934024554
0 5:0.291224112165
0 6:0.689777650668
0 7:0.876937354548
1 2:0.567035236374
1 3:0.422583866265
1 4:0.562241246924
1 5:0.44831682604
1 6:0.734033671774
1 7:1.0
2 3:0.493944918029
2 4:0.0232660862465
2 5:0.637392908783
2 6:0.73623139458
2 7:0.877784678384
3 4:0.488017067848
3 5:0.204592137127
3 6:0.554346149177
3 7:0.702039881918
4 5:0.633950196259
4 6:0.740366767196
4 7:0.879461192578
5 6:0.438355618671
5 7:0.652835404281
6 7:0.477130512662
</hsp>