sequences=16
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2J01-A2530-A2531
X
>2J03-A2530-A2531
X
>1YJW-02504-02505
X
>1Q81-A2504-A2505
X
>3CCQ-02504-02505
X
>1YIJ-02504-02505
X
>1YJ9-02504-02505
X
>1VQ5-02504-02505
X
>1K9M-A2504-A2505
X
>2QEX-02504-02505
X
>1KD1-A2504-A2505
X
>1VQ4-02504-02505
X
>1YJN-02504-02505
X
>1VQ7-02504-02505
X
>1YI2-02504-02505
X
>1VQ6-02504-02505
X
</seq>
<hsp>
0 1:0.00990429065062
0 2:0.919597105109
0 3:0.568864173961
0 4:1.0
0 5:0.810107013434
0 6:0.611139544608
0 7:0.570190934282
0 8:0.578089674011
0 9:0.62576247974
0 10:0.596821696822
0 11:0.6008631637
0 12:0.721159741065
0 13:0.604133198838
0 14:0.729818654568
0 15:0.651012003688
1 2:0.914746637987
1 3:0.566984504991
1 4:0.995924446049
1 5:0.805051374716
1 6:0.607526996501
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1 8:0.576821436369
1 9:0.622767834286
1 10:0.595099357203
1 11:0.597117835367
1 12:0.716052258987
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1 14:0.725257272138
1 15:0.647267509559
2 3:0.496847418448
2 4:0.191096554887
2 5:0.201213374292
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3 4:0.533655507142
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3 9:0.209706011536
3 10:0.149300969694
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3 13:0.229484186556
3 14:0.372627504169
3 15:0.260406837599
4 5:0.333378441225
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8 9:0.30829884816
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8 12:0.48201773941
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10 11:0.244014138839
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10 14:0.41515848004
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11 12:0.233283991678
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12 13:0.199322678918
12 14:0.117868977311
12 15:0.220972169715
13 14:0.205447545503
13 15:0.14691662466
14 15:0.146761962773
</hsp>