sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2J01-A1855-A1853
X
>2J03-A1855-A1853
X
>3KNI-A1854-A1852
X
>3R8T-A1931-A1929
X
>3F1F-A1933-A1931
X
>1FFK-01879-01877
X
>3OHJ-A1855-A1853
X
>3OH5-A1855-A1853
X
>3OI1-A1855-A1853
X
>3OH7-A1855-A1853
X
</seq>
<hsp>
0 1:0.11114699384
0 2:0.951697928169
0 3:0.709356078937
0 4:0.636413003723
0 5:0.717541928746
0 6:0.587002873364
0 7:0.612677553127
0 8:0.725447626145
0 9:0.674350546913
1 2:0.938769591399
1 3:0.692145358888
1 4:0.648321494328
1 5:0.676225039761
1 6:0.533644227279
1 7:0.554922235398
1 8:0.667670834376
1 9:0.62692813465
2 3:0.47470889205
2 4:0.479044054079
2 5:0.799767578328
2 6:0.675323327604
2 7:0.955820420627
2 8:1.0
2 9:0.950254052947
3 4:0.330774471347
3 5:0.62142261655
3 6:0.423908565196
3 7:0.728594155078
3 8:0.783315761166
3 9:0.708832090371
4 5:0.671164108665
4 6:0.488072331514
4 7:0.818151540545
4 8:0.859547264446
4 9:0.80672432695
5 6:0.398877989346
5 7:0.531096514977
5 8:0.347626001018
5 9:0.501485353177
6 7:0.430825884873
6 8:0.439827057784
6 9:0.4241580909
7 8:0.31595207717
7 9:0.157749926155
8 9:0.294125521264
</hsp>