sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2J03-A2753-A2710
X
>2J01-A2753-A2710
X
>3OI1-A2706-A2663
X
>3OHZ-A2706-A2663
X
>3OH7-A2706-A2663
X
>3OH5-A2706-A2663
X
>3OHJ-A2706-A2663
X
>3OHK-A2706-A2663
X
>2ZJR-X2661-X2618
X
>3KNK-A2781-A2738
X
</seq>
<hsp>
0 1:0.0348580968928
0 2:0.347969284617
0 3:0.324303017106
0 4:0.372905852629
0 5:0.368889522223
0 6:0.500214602919
0 7:0.522444130534
0 8:0.723130936317
0 9:1.0
1 2:0.351299082328
1 3:0.326127591907
1 4:0.358890576843
1 5:0.356696416785
1 6:0.486003081564
1 7:0.508189195974
1 8:0.711281152882
1 9:0.988665118183
2 3:0.0462333218107
2 4:0.261728829869
2 5:0.252242178226
2 6:0.343478473872
2 7:0.358130764252
2 8:0.563285924935
2 9:0.776066117603
3 4:0.228805427694
3 5:0.217314316993
3 6:0.331561846496
3 7:0.347975983313
3 8:0.541374225862
3 9:0.77480089744
4 5:0.033873234205
4 6:0.270234349583
4 7:0.283401721485
4 8:0.387639364747
4 9:0.694495870397
5 6:0.269231335975
5 7:0.283914879987
5 8:0.391479170411
5 9:0.695352665156
6 7:0.0451560428281
6 8:0.517146317584
6 9:0.568289809771
7 8:0.507487773377
7 9:0.5388947295
8 9:0.570208183396
</hsp>