sequences=9
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3CCS-02376-02323
X
>3KNK-A2558-A2559
X
>3R8T-A2645-A2646
X
>2ZJR-X2440-X2441
X
>3CCJ-01327-01328
X
>3G71-0199-0200
X
>2OTJ-0199-0200
X
>1QVG-01327-01328
X
>3CCR-01327-01328
X
</seq>
<hsp>
0 1:0.287924191626
0 2:0.423680394953
0 3:0.786995159582
0 4:0.711824063314
0 5:0.977808279689
0 6:0.972839149679
0 7:0.732983755956
0 8:0.753256748726
1 2:0.496700222159
1 3:0.81197303869
1 4:0.725752695262
1 5:0.99999582279
1 6:0.991506231394
1 7:0.752817130249
1 8:0.766256631651
2 3:0.552981709478
2 4:0.596008379614
2 5:0.805381532166
2 6:0.80820722808
2 7:0.62829463817
2 8:0.664037085244
3 4:0.593641711719
3 5:0.528215414575
3 6:0.561950790521
3 7:0.448820868722
3 8:0.522692519287
4 5:0.422826694535
4 6:0.387491446358
4 7:0.292260709468
4 8:0.270186047437
5 6:0.0600908649316
5 7:0.265893524577
5 8:0.295188765529
6 7:0.262925787047
6 8:0.278913612926
7 8:0.149694746376
</hsp>