sequences=12
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3CCJ-0258-0228
X
>3KNI-A1813-A1762
X
>3OI1-A398-A400
X
>3OHZ-A398-A400
X
>3F1H-A405-A407
X
>3F1F-A405-A407
X
>2J03-A398-A400
X
>2J01-A398-A400
X
>3OH5-A398-A400
X
>3OH7-A398-A400
X
>3OHK-A398-A400
X
>3OHJ-A398-A400
X
</seq>
<hsp>
0 1:0.998860852992
0 2:0.738288033443
0 3:0.737508579799
0 4:0.486684667535
0 5:0.500830512425
0 6:0.559175380665
0 7:0.557246451332
0 8:0.610920655675
0 9:0.608967688536
0 10:0.599791597354
0 11:0.619274291911
1 2:0.583339581679
1 3:0.612530530423
1 4:0.897995346323
1 5:0.901266593103
1 6:0.997158981244
1 7:0.99999504709
1 8:0.693917009577
1 9:0.673366430175
1 10:0.714591534471
1 11:0.735862149798
2 3:0.0518917484313
2 4:0.469002625395
2 5:0.466932964229
2 6:0.504926763756
2 7:0.507002833587
2 8:0.270807254001
2 9:0.270621906449
2 10:0.297760087643
2 11:0.289872933552
3 4:0.447160322169
3 5:0.444008577382
3 6:0.478662679505
3 7:0.480993611589
3 8:0.246371981055
3 9:0.251545181312
3 10:0.280460311122
3 11:0.265132091979
4 5:0.0283354620533
4 6:0.156405203144
4 7:0.164614968981
4 8:0.27395409847
4 9:0.276547537089
4 10:0.240099466749
4 11:0.237461963894
5 6:0.147033094783
5 7:0.156202399117
5 8:0.276286577246
5 9:0.278790968216
5 10:0.238886117132
5 11:0.234888098741
6 7:0.0185731864298
6 8:0.351165785849
6 9:0.361993877309
6 10:0.317727804467
6 11:0.299249763552
7 8:0.354201750006
7 9:0.364727709296
7 10:0.319406583845
7 11:0.301189950897
8 9:0.0509173485198
8 10:0.110562826149
8 11:0.0941911136895
9 10:0.0809920302438
9 11:0.0872208969361
10 11:0.0537802179879
</hsp>