sequences=7
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3F1E-Y17-Y16
X
>3F1G-Y17-Y16
X
>2J03-A1911-A1912
X
>2J01-A1911-A1912
X
>3U5D-12093-12092
X
>3OI1-A1911-A1912
X
>3OHZ-A1911-A1912
X
</seq>
<hsp>
0 1:0.0323688647167
0 2:0.820233551586
0 3:0.832005387636
0 4:0.993237668569
0 5:0.944156764652
0 6:0.841755752172
1 2:0.822590239848
1 3:0.832300176674
1 4:0.999994165867
1 5:0.937175066642
1 6:0.835416487666
2 3:0.0803681971578
2 4:0.321212663051
2 5:0.581300074436
2 6:0.516217059359
3 4:0.344657396458
3 5:0.549713294475
3 6:0.480051356004
4 5:0.647139193971
4 6:0.594924690086
5 6:0.177501952583
</hsp>