sequences=7
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3R8N-A1050-A1198
X
>2CSX-C7-C12
X
>2UUB-A1029-A1176
X
>2J00-A1029-A1176
X
>3F1G-Z7-Z12
X
>3F1E-Z7-Z12
X
>2QA4-0258-0228
X
</seq>
<hsp>
0 1:0.477648746858
0 2:0.527533179526
0 3:0.377765971821
0 4:0.754638129336
0 5:0.75062006374
0 6:0.637736203151
1 2:0.525311022608
1 3:0.690152355137
1 4:0.515908695406
1 5:0.512562635706
1 6:0.817293272553
2 3:0.507825386474
2 4:0.831960471667
2 5:0.828196587141
2 6:0.911275011998
3 4:0.999998204672
3 5:0.995843377992
3 6:0.82554979301
4 5:0.0072255798051
4 6:0.653750815513
5 6:0.652267445748
</hsp>