sequences=15
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3R8T-A1053-A1052
X
>3U5D-11980-11981
X
>3R8S-A2203-A2202
X
>1QA6-C9-C8
X
>1QA6-D9-D8
X
>1HC8-C9-C8
X
>1Y39-D9-D8
X
>1MMS-D9-D8
X
>1VQM-01123-01122
X
>1VQL-01123-01122
X
>3CPW-01123-01122
X
>3Q3Z-V30-V32
X
>3U5H-52622-52569
X
>3CCR-0536-0592
X
>3CCJ-0536-0592
X
</seq>
<hsp>
0 1:0.35997446366
0 2:0.338565524087
0 3:0.610916589914
0 4:0.61094983292
0 5:0.324402774553
0 6:0.356711986045
0 7:0.383835199062
0 8:0.516225372313
0 9:0.526610523536
0 10:0.528743162759
0 11:0.933340120574
0 12:0.726586267289
0 13:1.0
0 14:0.983461870789
1 2:0.240203386796
1 3:0.661684092384
1 4:0.661664459528
1 5:0.317988131549
1 6:0.286433341242
1 7:0.398191924911
1 8:0.560859280379
1 9:0.558688650754
1 10:0.426836374805
1 11:0.732444884789
1 12:0.608622720534
1 13:0.895593025787
1 14:0.835983047086
2 3:0.588640220692
2 4:0.588533271976
2 5:0.242104754021
2 6:0.204260114724
2 7:0.344893174296
2 8:0.538948975297
2 9:0.547232824655
2 10:0.398116915866
2 11:0.75966457544
2 12:0.575172671023
2 13:0.873903511054
2 14:0.811352409334
3 4:0.000768675827489
3 5:0.378785113991
3 6:0.420963513599
3 7:0.333048823645
3 8:0.45576910271
3 9:0.424799316248
3 10:0.349605119845
3 11:0.986315511841
3 12:0.673050317315
3 13:0.97369726164
3 14:0.910168313768
4 5:0.378713868921
4 6:0.420923309304
4 7:0.333133905796
4 8:0.455805646087
4 9:0.424804843996
4 10:0.349491425039
4 11:0.986092841154
4 12:0.672832500118
4 13:0.973484805195
4 14:0.909942146469
5 6:0.086852013409
5 7:0.160919052368
5 8:0.374673039823
5 9:0.367495579597
5 10:0.228025982072
5 11:0.784433620704
5 12:0.532933109953
5 13:0.85218784734
5 14:0.791124415108
6 7:0.17559764138
6 8:0.391115210184
6 9:0.387687186087
6 10:0.220373339272
6 11:0.741999851089
6 12:0.500948026598
6 13:0.820279199976
6 14:0.753202632042
7 8:0.273892652164
7 9:0.274876052986
7 10:0.229180371784
7 11:0.788114488201
7 12:0.509215234172
7 13:0.806443596643
7 14:0.755934992646
8 9:0.0983383413645
8 10:0.340293711664
8 11:0.742183404283
8 12:0.489589863217
8 13:0.682941927944
8 14:0.666247996503
9 10:0.305163268766
9 11:0.714539712914
9 12:0.451234254906
9 13:0.666359252516
9 14:0.647664261501
10 11:0.680165109162
10 12:0.424582670359
10 13:0.740733313273
10 14:0.655900541275
11 12:0.369608280176
11 13:0.35157460157
11 14:0.292600036959
12 13:0.383354876714
12 14:0.319879071438
13 14:0.17591004384
</hsp>