sequences=11
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3CME-0271-0355
X
>3CMA-0271-0355
X
>1YJN-0271-0355
X
>1VQN-0271-0355
X
>1VQL-0271-0355
X
>3G6E-0271-0355
X
>1VQP-0271-0355
X
>3CC2-0271-0355
X
>1YIJ-0271-0355
X
>1YJ9-0271-0355
X
>3CC4-0271-0355
X
</seq>
<hsp>
0 1:0.256642610929
0 2:0.938843646121
0 3:0.372738893023
0 4:0.399221119167
0 5:0.642171891259
0 6:0.448968694212
0 7:0.706578625094
0 8:0.848624318699
0 9:0.885342100823
0 10:0.813719774602
1 2:0.999999919933
1 3:0.311043194868
1 4:0.370545991392
1 5:0.621857843179
1 6:0.536182821881
1 7:0.749098457675
1 8:0.86631481568
1 9:0.914385809897
1 10:0.832932445093
2 3:0.776059663004
2 4:0.889752426344
2 5:0.530051888132
2 6:0.64466460524
2 7:0.353263217036
2 8:0.299468213117
2 9:0.473449685271
2 10:0.419186042026
3 4:0.401437902458
3 5:0.528147222615
3 6:0.439027247864
3 7:0.584035447002
3 8:0.650975602596
3 9:0.770222069405
3 10:0.687270288354
4 5:0.576871100931
4 6:0.308907899207
4 7:0.680284376128
4 8:0.698013849296
4 9:0.731022596781
4 10:0.726011035244
5 6:0.454206427692
5 7:0.247197582434
5 8:0.414062481818
5 9:0.409676161418
5 10:0.283022595983
6 7:0.453149727775
6 8:0.485499244182
6 9:0.511384657359
6 10:0.513112740147
7 8:0.298071903818
7 9:0.323908289343
7 10:0.170954456407
8 9:0.290580436387
8 10:0.289285304369
9 10:0.213229429813
</hsp>