sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2J03-A436-A279
X
>3OGE-A1175-A1030
X
>3OHY-A1175-A1030
X
>3OH5-A436-A279
X
>2UUA-A1175-A1030
X
>2VQF-A1175-A1030
X
>3OHD-A1175-A1030
X
>3OHC-A1175-A1030
X
>1N32-A1175-A1030
X
>1XMQ-A1170-A1025
X
</seq>
<hsp>
0 1:0.727114433059
0 2:0.661217187525
0 3:0.380464815265
0 4:0.822084331233
0 5:0.741817991041
0 6:0.716963895822
0 7:0.722029744177
0 8:0.904214843175
0 9:1.0
1 2:0.259776375251
1 3:0.638630374961
1 4:0.443887029801
1 5:0.316218603544
1 6:0.334696157029
1 7:0.35295117571
1 8:0.63990930214
1 9:0.68422570945
2 3:0.622171026537
2 4:0.533012873559
2 5:0.395174969906
2 6:0.374585273409
2 7:0.394039573167
2 8:0.649620872699
2 9:0.745310036072
3 4:0.593327697816
3 5:0.553143578901
3 6:0.514373360166
3 7:0.511634356468
3 8:0.68029033866
3 9:0.729569188639
4 5:0.204345773882
4 6:0.378896789609
4 7:0.378822800939
4 8:0.340426906808
4 9:0.345131840493
5 6:0.300243085317
5 7:0.304779005975
5 8:0.436806331603
5 9:0.464888970228
6 7:0.0247864028479
6 8:0.483258771608
6 9:0.493813733652
7 8:0.480055950797
7 9:0.484505365914
8 9:0.201680908239
</hsp>