sequences=9
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3CCS-01123-01122
X
>3KNH-A534-A535
X
>3F1H-A83-A82
X
>3F1F-A83-A82
X
>3CC7-01123-01122
X
>2QA4-01122-01121
X
>3R8T-A2492-A2439
X
>2J03-A2377-A2324
X
>3R8S-A2493-A2440
X
</seq>
<hsp>
0 1:0.916824781372
0 2:0.393174242826
0 3:0.400611790053
0 4:0.570684555434
0 5:0.437317193528
0 6:0.82401986944
0 7:1.0
0 8:0.858146161661
1 2:0.826531877589
1 3:0.803195134214
1 4:0.50125140809
1 5:0.819919606972
1 6:0.687634359329
1 7:0.854496756142
1 8:0.967124600509
2 3:0.0375417831536
2 4:0.445661417183
2 5:0.466518275657
2 6:0.717777141407
2 7:0.938841997823
2 8:0.839379242775
3 4:0.427181033691
3 5:0.45710916954
3 6:0.691617915833
3 7:0.912035298632
3 8:0.819367850083
4 5:0.585142805512
4 6:0.449211100709
4 7:0.721015293336
4 8:0.674323996219
5 6:0.793752792013
5 7:0.853823786916
5 8:0.736538202062
6 7:0.37071411554
6 8:0.483964263897
7 8:0.427967072639
</hsp>