sequences=7
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>1J6S-C5-C4
X
>2AWE-G5-G4
X
>2AWE-D5-D4
X
>1J8G-C5-C4
X
>2AWE-F5-F4
X
>1P79-A4-A3
X
>2GRB-B4-B3
X
</seq>
<hsp>
0 1:0.678994244047
0 2:0.531663199122
0 3:0.315472180972
0 4:0.357793884627
0 5:0.627388401111
0 6:0.504465930901
1 2:0.324639185658
1 3:0.613615268976
1 4:0.549190351207
1 5:1.0
1 6:0.922792430178
2 3:0.490614199946
2 4:0.446350567477
2 5:0.765408422523
2 6:0.745670927982
3 4:0.244897661678
3 5:0.633943338675
3 6:0.487639612551
4 5:0.628005083501
4 6:0.443316158796
5 6:0.347316091813
</hsp>