sequences=8
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2ZJR-X1563-X1189
X
>3R8S-A1037-A1104
X
>3NDB-M75-M54
X
>2QA4-01744-02713
X
>3CCS-01637-01643
X
>3CCR-01637-01643
X
>3KNK-A573-A1207
X
>1RLG-D15-D6
X
</seq>
<hsp>
0 1:0.550035181862
0 2:0.527176167207
0 3:0.400362788852
0 4:0.884915605419
0 5:0.86508619966
0 6:0.999996594452
0 7:0.699603550172
1 2:0.74806609603
1 3:0.479736540951
1 4:0.789110622124
1 5:0.719956844059
1 6:0.540465205955
1 7:0.521923120894
2 3:0.64065314218
2 4:0.594451905858
2 5:0.642048862996
2 6:0.94846731921
2 7:0.860558658899
3 4:0.802431904711
3 5:0.737759476832
3 6:0.889472351815
3 7:0.566966852021
4 5:0.132416509911
4 6:0.72969488765
4 7:0.777993201313
5 6:0.663314471064
5 7:0.691606238526
6 7:0.750211985191
</hsp>