sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3KNH-A1062-A1038
X
>2UXC-A1071-A1047
X
>2VQE-A1071-A1047
X
>1XMQ-A1066-A1042
X
>3F1E-A1071-A1047
X
>3F1G-A1071-A1047
X
>2UUA-A1071-A1047
X
>2UUB-A1071-A1047
X
>2VQF-A1071-A1047
X
>1N32-A1071-A1047
X
</seq>
<hsp>
0 1:0.999993937659
0 2:0.85091210629
0 3:0.720516642771
0 4:0.920921011991
0 5:0.909467953672
0 6:0.77823197469
0 7:0.903524688602
0 8:0.840485150521
0 9:0.964218851715
1 2:0.242518604283
1 3:0.724765267373
1 4:0.580988313446
1 5:0.576577240061
1 6:0.448152324432
1 7:0.404247793007
1 8:0.762464242888
1 9:0.571138115962
2 3:0.521570267403
2 4:0.431380163109
2 5:0.425682088314
2 6:0.306636456736
2 7:0.266294514735
2 8:0.570134572044
2 9:0.419348641876
3 4:0.70760853851
3 5:0.698525558144
3 6:0.444650039103
3 7:0.612481021941
3 8:0.386028998297
3 9:0.552915254524
4 5:0.0286604446081
4 6:0.54580900407
4 7:0.301530019408
4 8:0.667903249858
4 9:0.508049400077
5 6:0.539110044397
5 7:0.292045568608
5 8:0.65612665052
5 9:0.498876746928
6 7:0.346216475094
6 8:0.486032522153
6 9:0.476807407483
7 8:0.522386227247
7 9:0.340425371048
8 9:0.317841265616
</hsp>