sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3R8T-A2349-A2352
X
>3U5F-6373-6360
X
>3R8N-A303-A290
X
>3F1G-A295-A282
X
>3F1E-A295-A282
X
>2ZZM-B50-B53
X
>3R8O-A303-A290
X
>2UUA-A295-A282
X
>2UXC-A295-A282
X
>1XMQ-A295-A282
X
</seq>
<hsp>
0 1:0.868541976053
0 2:0.725772656835
0 3:0.849894476947
0 4:0.830953985562
0 5:0.541058118247
0 6:0.645877493418
0 7:0.616564839648
0 8:0.539776531235
0 9:0.63432421608
1 2:0.668942691016
1 3:0.92299484786
1 4:0.903166965337
1 5:1.0
1 6:0.826465394025
1 7:0.622650920661
1 8:0.725584804668
1 9:0.611041272372
2 3:0.475426975292
2 4:0.45876306619
2 5:0.57191305344
2 6:0.564427334883
2 7:0.404850091733
2 8:0.335200021122
2 9:0.476785921269
3 4:0.0387825356352
3 5:0.612753942816
3 6:0.502364199299
3 7:0.493282085504
3 8:0.389118259479
3 9:0.503678661079
4 5:0.607242565837
4 6:0.487825114732
4 7:0.476859832677
4 8:0.37065608726
4 9:0.483690156148
5 6:0.449357376627
5 7:0.527101790288
5 8:0.408324934359
5 9:0.592516705225
6 7:0.286168397372
6 8:0.323981162394
6 9:0.274412452212
7 8:0.210667933578
7 9:0.123143480434
8 9:0.27227933091
</hsp>