sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2ZJR-X562-X565
X
>3G6E-989-992
X
>3CCU-989-992
X
>3CCQ-01752-01755
X
>3KNI-A1319-A1322
X
>3CCL-01752-01755
X
>1VQN-01752-01755
X
>3OH5-A641-A644
X
>3R8S-A2368-A2371
X
>3OI1-A641-A644
X
</seq>
<hsp>
0 1:0.612910098872
0 2:1.0
0 3:0.538693324172
0 4:0.635012419468
0 5:0.454000325533
0 6:0.345552365585
0 7:0.770708416832
0 8:0.720516376584
0 9:0.645226766619
1 2:0.607447996008
1 3:0.448876756385
1 4:0.4158613
1 5:0.474363323763
1 6:0.471311016797
1 7:0.554554114885
1 8:0.306290544826
1 9:0.485086896989
2 3:0.615185049351
2 4:0.788918265694
2 5:0.766146139919
2 6:0.852651486862
2 7:0.405615579524
2 8:0.464316164363
2 9:0.598654832088
3 4:0.656537470893
3 5:0.183050587389
3 6:0.38617894275
3 7:0.352625830738
3 8:0.417993270392
3 9:0.23206649853
4 5:0.643450830127
4 6:0.550574856309
4 7:0.665373041516
4 8:0.599305650125
4 9:0.610366303553
5 6:0.2695008314
5 7:0.469790800436
5 8:0.483738078502
5 9:0.268063060243
6 7:0.579682688584
6 8:0.519226978517
6 9:0.426843313256
7 8:0.412123629095
7 9:0.255257214027
8 9:0.413130700736
</hsp>