sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2J00-A1488-A1491
X
>2UUB-A1488-A1491
X
>1G1X-I9-I12
X
>2J03-A201-A443
X
>3F1H-A204-A450
X
>2QEX-0178-0423
X
>2QA4-0178-0423
X
>3I56-0178-0423
X
>1QVG-0178-0423
X
>1K9M-A178-A423
X
</seq>
<hsp>
0 1:0.29365412468
0 2:1.0
0 3:0.955333887864
0 4:0.948477397323
0 5:0.933651157777
0 6:0.892284647442
0 7:0.846397936605
0 8:0.835466660235
0 9:0.906894446116
1 2:0.990559327503
1 3:0.930748771673
1 4:0.870156643266
1 5:0.863119532369
1 6:0.830874116307
1 7:0.85093409093
1 8:0.815325325585
1 9:0.892993490463
2 3:0.524548150003
2 4:0.760821712122
2 5:0.879418322861
2 6:0.86759481377
2 7:0.740300866122
2 8:0.727446211039
2 9:0.727070655905
3 4:0.442314698835
3 5:0.600203295353
3 6:0.571190055239
3 7:0.442210196658
3 8:0.429170867157
3 9:0.412612553784
4 5:0.189605271155
4 6:0.197929559222
4 7:0.263955897148
4 8:0.218001948133
4 9:0.255560340929
5 6:0.0766602085134
5 7:0.278814034186
5 8:0.233656991025
5 9:0.283733157968
6 7:0.242622684752
6 8:0.193244026306
6 9:0.243513072968
7 8:0.106895134739
7 9:0.153382781562
8 9:0.111577075859
</hsp>