sequences=9
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3U5D-12028-12031
X
>2UXC-A1242-A1245
X
>3R8T-A462-A465
X
>3R8T-A629-A632
X
>3R8O-A1075-A1078
X
>3KNH-A1045-A1048
X
>2QA4-01285-01288
X
>3U5H-52032-52035
X
>3R8O-A1011-A1014
X
</seq>
<hsp>
0 1:0.412197634757
0 2:0.274188390419
0 3:0.581350542795
0 4:0.700296018474
0 5:0.550455632784
0 6:0.533668756367
0 7:0.37205904395
0 8:0.633410718028
1 2:0.429565961193
1 3:0.512274838513
1 4:0.515925113287
1 5:0.761339766867
1 6:0.285440682092
1 7:0.247602548213
1 8:0.870349765448
2 3:0.562082342119
2 4:0.706127424757
2 5:0.417321331847
2 6:0.597938773309
2 7:0.452745884602
2 8:0.679329067697
3 4:0.564389543811
3 5:0.76443175723
3 6:0.745995551486
3 7:0.544081570508
3 8:0.72755045633
4 5:0.97757412209
4 6:0.618313443673
4 7:0.50123289106
4 8:0.801632551072
5 6:0.947321334287
5 7:0.788442814248
5 8:0.675037391735
6 7:0.279728401311
6 8:1.0
7 8:0.745070953627
</hsp>