sequences=6
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3CMA-989-992
X
>3F1H-A1383-A1386
X
>3F1F-A1383-A1386
X
>1M5O-E74-E77
X
>3F1F-A1868-A1871
X
>3F1H-A1868-A1871
X
</seq>
<hsp>
0 1:0.47272264107
0 2:0.472541025201
0 3:0.712673570764
0 4:0.734325839465
0 5:0.731642699045
1 2:0.0357679573219
1 3:0.92648450145
1 4:0.998866608612
1 5:0.990670120072
2 3:0.937407983997
2 4:0.999998902087
2 5:0.991729681041
3 4:0.576248703062
3 5:0.570860695949
4 5:0.0256264063349
</hsp>