sequences=13
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>1VQ5-01129-01132
X
>1TN2-A32-A35
X
>1TN1-A32-A35
X
>1VQ4-01129-01132
X
>3F1F-A1085-A1088
X
>3F1H-A1085-A1088
X
>1G59-D53-D56
X
>3R8S-A2556-A2559
X
>2ZH6-B13-B16
X
>1EXD-B51-B54
X
>1QU3-T55-T58
X
>2DU3-D53-D56
X
>2ZXU-C54-C57
X
</seq>
<hsp>
0 1:0.29911173448
0 2:0.29911173448
0 3:0.127432165677
0 4:0.390524526853
0 5:0.390568978041
0 6:0.518101714338
0 7:0.913563649519
0 8:0.597163827921
0 9:0.550001518335
0 10:0.604822975051
0 11:0.459284350931
0 12:0.474946645752
1 2:1.74913437369e-07
1 3:0.398551834957
1 4:0.627497452103
1 5:0.627936003463
1 6:0.389312975769
1 7:0.849458477786
1 8:0.527865434796
1 9:0.481488315597
1 10:0.443041857662
1 11:0.364478412026
1 12:0.471905493439
2 3:0.398551834957
2 4:0.627497452103
2 5:0.627936003463
2 6:0.389312975769
2 7:0.849458477786
2 8:0.527865434796
2 9:0.481488315597
2 10:0.443041857662
2 11:0.364478412026
2 12:0.471905493439
3 4:0.361709690039
3 5:0.361119289106
3 6:0.614234303541
3 7:1.0
3 8:0.689691764097
3 9:0.631327702695
3 10:0.683193434932
3 11:0.527131510338
3 12:0.520286677113
4 5:0.00421998570338
4 6:0.734521754338
4 7:0.884199992863
4 8:0.699516154062
4 9:0.740355663132
4 10:0.885610707826
4 11:0.716287266672
4 12:0.671688358182
5 6:0.734906983713
5 7:0.885325932283
5 8:0.700176168427
5 9:0.741508829405
5 10:0.885882667411
5 11:0.71623996927
5 12:0.671838175437
6 7:0.628978582451
6 8:0.229649115038
6 9:0.291248662868
6 10:0.247575316585
6 11:0.205753401752
6 12:0.318532544223
7 8:0.426934257042
7 9:0.678527100288
7 10:0.832553767987
7 11:0.797469301264
7 12:0.823967848602
8 9:0.324353491146
8 10:0.448322791163
8 11:0.390092471771
8 12:0.422352683242
9 10:0.334959583579
9 11:0.311633522194
9 12:0.277737543882
10 11:0.193881381971
10 12:0.321856672283
11 12:0.186688469087
</hsp>