sequences=9
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2ZJR-X2218-X2221
X
>3KNK-A2336-A2339
X
>3R8T-A2423-A2426
X
>3R8S-A2424-A2427
X
>3F1F-A2415-A2418
X
>3F1H-A2415-A2418
X
>3U5D-11185-11188
X
>2J01-A2308-A2311
X
>2J03-A2308-A2311
X
</seq>
<hsp>
0 1:0.101930437775
0 2:0.0999634396854
0 3:0.0935631655971
0 4:0.0826639071193
0 5:0.0839971485346
0 6:0.945128217099
0 7:0.0813678443963
0 8:0.089324801749
1 2:0.105769382138
1 3:0.107830923787
1 4:0.123955830931
1 5:0.125371870236
1 6:0.91545767595
1 7:0.0871544008925
1 8:0.0866720307622
2 3:0.0663220557191
2 4:0.132605728558
2 5:0.131948338684
2 6:0.928384247381
2 7:0.0713084549185
2 8:0.0725988122529
3 4:0.135480980184
3 5:0.135832818604
3 6:0.927797227095
3 7:0.0547284306649
3 8:0.056215561261
4 5:0.0079918495497
4 6:1.0
4 7:0.133980791475
4 8:0.138410408651
5 6:0.998026995816
5 7:0.134466911083
5 8:0.138795500113
6 7:0.900617320587
6 8:0.898051019179
7 8:0.0101019216767
</hsp>