sequences=9
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2ZZN-D53-D56
X
>3R8O-V54-V57
X
>2DRB-B13-B16
X
>3OI1-A577-A580
X
>3OHZ-A577-A580
X
>3OVS-C13-C16
X
>1N77-C53-C56
X
>2CV2-D53-D56
X
>2CV2-C53-C56
X
</seq>
<hsp>
0 1:0.182920078247
0 2:0.289293393526
0 3:0.741004921421
0 4:0.739798594707
0 5:0.161997788211
0 6:0.165996649522
0 7:0.128558338609
0 8:0.123567447116
1 2:0.442442663626
1 3:0.579444398498
1 4:0.580217219129
1 5:0.113942493749
1 6:0.188374872501
1 7:0.140487858839
1 8:0.150026623426
2 3:0.99999974466
2 4:0.997822407016
2 5:0.404008258811
2 6:0.342343884065
2 7:0.359032737308
2 8:0.351010938144
3 4:0.0311740209663
3 5:0.638502980417
3 6:0.729746127359
3 7:0.681905716143
3 8:0.692979297933
4 5:0.640540642086
4 6:0.729869640555
4 7:0.681514929554
4 8:0.69260954142
5 6:0.212291363679
5 7:0.169273531104
5 8:0.172185083689
6 7:0.0807093831115
6 8:0.0769057271841
7 8:0.0137724818995
</hsp>