sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2ZJR-X2294-X2340
X
>2J03-A2384-A2430
X
>2J01-A2384-A2430
X
>3OH7-A1447-A1371
X
>3OH5-A1447-A1371
X
>3OHZ-A1447-A1371
X
>3OI1-A1447-A1371
X
>3R8S-A1491-A1415
X
>3OHJ-A1447-A1371
X
>3OHK-A1447-A1371
X
</seq>
<hsp>
0 1:0.398672660511
0 2:0.427076935632
0 3:0.8169176533
0 4:0.78908872034
0 5:0.994053017593
0 6:1.0
0 7:0.830640727518
0 8:0.884114528913
0 9:0.876228617729
1 2:0.0449753532938
1 3:0.460988083611
1 4:0.439467553513
1 5:0.661308700058
1 6:0.658068925443
1 7:0.495163133793
1 8:0.524914136517
1 9:0.508517648723
2 3:0.447794325627
2 4:0.429365278983
2 5:0.643971288874
2 6:0.639671085939
2 7:0.477812485435
2 8:0.506570235306
2 9:0.487718672273
3 4:0.0790219831289
3 5:0.384478175537
3 6:0.361439696774
3 7:0.364953882887
3 8:0.281481789977
3 9:0.261609374065
4 5:0.379085402791
4 6:0.362494737476
4 7:0.336953437258
4 8:0.271526260762
4 9:0.260879449215
5 6:0.0557602175465
5 7:0.402125173506
5 8:0.20109633599
5 9:0.24277855246
6 7:0.40062084739
6 8:0.194128735657
6 9:0.227709629124
7 8:0.259297610727
7 9:0.227643901087
8 9:0.0680958640017
</hsp>