sequences=11
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>1VQN-01090-01089
X
>3CMA-01090-01089
X
>3V7E-D17-D16
X
>3DIM-A24-A23
X
>3D0X-A21-A20
X
>3DIR-A24-A23
X
>3OXE-B61-B60
X
>3DIG-X24-X23
X
>2UUB-A878-A877
X
>3OHD-A878-A877
X
>3OGE-A878-A877
X
</seq>
<hsp>
0 1:0.233720704669
0 2:0.585775603584
0 3:0.463915314763
0 4:0.481159492267
0 5:0.391175444924
0 6:0.532203105414
0 7:0.529850964661
0 8:0.8367349057
0 9:0.959180969908
0 10:0.941817348462
1 2:0.465681297765
1 3:0.477246940372
1 4:0.550862174959
1 5:0.456355699737
1 6:0.46724443995
1 7:0.512125669964
1 8:0.864731485411
1 9:0.999998604749
1 10:0.983613735178
2 3:0.516874750143
2 4:0.749293815008
2 5:0.557216218067
2 6:0.498049778422
2 7:0.51660699069
2 8:0.710021830852
2 9:0.823056906244
2 10:0.82978068433
3 4:0.268973293865
3 5:0.132543248737
3 6:0.217039938314
3 7:0.118051623622
3 8:0.572213149184
3 9:0.756779782254
3 10:0.671189063165
4 5:0.234095418102
4 6:0.372808997267
4 7:0.3048911004
4 8:0.695858041683
4 9:0.881712878441
4 10:0.777910413622
5 6:0.311926714809
5 7:0.200086681844
5 8:0.55027684441
5 9:0.732865412752
5 10:0.655293393334
6 7:0.219102111842
6 8:0.692006042886
6 9:0.912808350857
6 10:0.819204873146
7 8:0.527096099009
7 9:0.722327101961
7 10:0.625686747879
8 9:0.349685141718
8 10:0.254576245881
9 10:0.203117214143
</hsp>