sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>1NJI-A523-A2009
X
>1N8R-A523-A2009
X
>3CC2-0523-02009
X
>2OTJ-0523-02009
X
>3CCL-0523-02009
X
>1FFK-0522-01962
X
>1VQ9-0523-02009
X
>1VQP-0523-02009
X
>3CC4-0523-02009
X
>1VQM-0523-02009
X
</seq>
<hsp>
0 1:0.99998353208
0 2:0.7081756497
0 3:0.641155080146
0 4:0.749425666501
0 5:0.57589576325
0 6:0.917386202281
0 7:0.760122088871
0 8:0.788598344216
0 9:0.719940074516
1 2:0.995082001428
1 3:0.759677724187
1 4:0.515298231259
1 5:0.641772165852
1 6:0.940675833084
1 7:0.791531804067
1 8:0.561750621126
1 9:0.635561346725
2 3:0.667195867879
2 4:0.715193419155
2 5:0.526034489603
2 6:0.689565822548
2 7:0.647600685425
2 8:0.708902795576
2 9:0.644305401761
3 4:0.417738993648
3 5:0.491962048309
3 6:0.701155072196
3 7:0.489428007213
3 8:0.597684217335
3 9:0.481948448862
4 5:0.348183070473
4 6:0.617126890244
4 7:0.49224455844
4 8:0.360139595223
4 9:0.324743192938
5 6:0.753862830299
5 7:0.614687266649
5 8:0.474785139988
5 9:0.463762387781
6 7:0.387893531488
6 8:0.558994598411
6 9:0.433909892365
7 8:0.394322847179
7 9:0.230775605618
8 9:0.23284642925
</hsp>