sequences=8
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3U5D-12702-12731
X
>2OTJ-02457-02486
X
>1KD1-A2457-A2486
X
>1JJ2-02457-02486
X
>1K9M-A2457-A2486
X
>1VQ7-02457-02486
X
>1YJ9-02457-02486
X
>1VQO-02457-02486
X
</seq>
<hsp>
0 1:0.754463670292
0 2:0.672044994153
0 3:0.627774811068
0 4:0.716599199998
0 5:0.687362161882
0 6:0.712282378556
0 7:0.999999390753
1 2:0.291759357819
1 3:0.19273619403
1 4:0.253653152636
1 5:0.179514391519
1 6:0.306260468184
1 7:0.509435025697
2 3:0.191440499167
2 4:0.0943007132026
2 5:0.199190032433
2 6:0.203723167448
2 7:0.616107463027
3 4:0.187643476103
3 5:0.09650933352
3 6:0.248978587476
3 7:0.555385409747
4 5:0.165933308885
4 6:0.227739448429
4 7:0.606976247424
5 6:0.297971543678
5 7:0.549459445201
6 7:0.551659279286
</hsp>