sequences=6
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3U5B-2560-2559
X
>3G71-0549-0548
X
>3OI0-A1051-A1050
X
>3KNI-A913-A912
X
>3CME-918-917
X
>1N8R-A34-A33
X
</seq>
<hsp>
0 1:0.75100131059
0 2:1.0
0 3:0.993105709787
0 4:0.449819996591
0 5:0.995589770256
1 2:0.430454395413
1 3:0.339695992563
1 4:0.408485526233
1 5:0.403418311182
2 3:0.419350092609
2 4:0.569656053669
2 5:0.512197301352
3 4:0.610438358316
3 5:0.398467137991
4 5:0.67433535756
</hsp>