sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>1YIJ-9101-9100
X
>3F1F-A1205-A1204
X
>1XMQ-A926-A925
X
>3CMA-02540-02539
X
>3OHJ-A2086-A2085
X
>1JJ2-9101-9100
X
>3OH7-A2086-A2085
X
>2GCS-A8-A7
X
>3OHK-A2673-A2672
X
>3KNI-A927-A926
X
</seq>
<hsp>
0 1:0.44174239301
0 2:0.581000618332
0 3:0.201921298626
0 4:0.555036477204
0 5:0.0863645556257
0 6:0.487455901281
0 7:0.607481490128
0 8:0.304797235565
0 9:0.898030708571
1 2:0.455586089108
1 3:0.315026023832
1 4:0.372781519056
1 5:0.456782319856
1 6:0.483389933636
1 7:0.612061127143
1 8:0.352358704096
1 9:1.0
2 3:0.462424037579
2 4:0.297440059225
2 5:0.567020546904
2 6:0.322586389285
2 7:0.378144819737
2 8:0.479550137111
2 9:0.793377084617
3 4:0.449691749404
3 5:0.245523578352
3 6:0.436319645664
3 7:0.595493701247
3 8:0.251319360465
3 9:0.943628062311
4 5:0.536499843572
4 6:0.243193109826
4 7:0.459074361337
4 8:0.40486652307
4 9:0.831063234044
5 6:0.44563971474
5 7:0.550966242013
5 8:0.285134090302
5 9:0.820281386483
6 7:0.310958017925
6 8:0.385101096069
6 9:0.657724815086
7 8:0.539285377994
7 9:0.474192062495
8 9:0.806893723683
</hsp>