sequences=9
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3CD6-0173-0172
X
>1VQ9-0173-0172
X
>3OHK-A196-A195
X
>3F1E-A536-A535
X
>3KNK-A1782-A1781
X
>1Q81-A2366-A2365
X
>2OTJ-02366-02365
X
>3CC2-01665-01664
X
>1Q82-A1665-A1664
X
</seq>
<hsp>
0 1:0.186642155282
0 2:0.247244503814
0 3:0.737085378976
0 4:0.882306390616
0 5:0.987911148898
0 6:0.970885733612
0 7:0.839520397831
0 8:0.893992599962
1 2:0.131211759882
1 3:0.718143963218
1 4:0.835142538849
1 5:0.999994334349
1 6:0.973151697728
1 7:0.852114505244
1 8:0.878873945587
2 3:0.670143927723
2 4:0.776181039139
2 5:0.93647212481
2 6:0.913046183236
2 7:0.796366373274
2 8:0.824257954578
3 4:0.245191331988
3 5:0.425146713726
3 6:0.405536024479
3 7:0.486532329064
3 8:0.452259755111
4 5:0.438059080597
4 6:0.426698646735
4 7:0.480586483631
4 8:0.373847438832
5 6:0.0961750241942
5 7:0.302270902937
5 8:0.317452155451
6 7:0.31081058594
6 8:0.310941978074
7 8:0.180572180338
</hsp>