sequences=8
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>1FJG-A995-A994
X
>3U5D-1670-1669
X
>3OHJ-A483-A482
X
>2ZJR-X165-X164
X
>3CCJ-02594-02593
X
>3CCE-01502-01501
X
>1YHQ-01119-01118
X
>3G6E-01119-01118
X
</seq>
<hsp>
0 1:0.849414629872
0 2:1.0
0 3:0.846844643378
0 4:0.708381257703
0 5:0.828033768817
0 6:0.920300554577
0 7:0.88384087949
1 2:0.926235940734
1 3:0.364173471902
1 4:0.594857136023
1 5:0.613652044994
1 6:0.801858662467
1 7:0.759641276561
2 3:0.982370554123
2 4:0.710899312956
2 5:0.346575015174
2 6:0.430528504567
2 7:0.467475152427
3 4:0.651557211257
3 5:0.697540554444
3 6:0.832138906821
3 7:0.757042371555
4 5:0.551490125971
4 6:0.430483041641
4 7:0.388116610198
5 6:0.415590881358
5 7:0.418174290978
6 7:0.125412417698
</hsp>