sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>1JJ2-02082-02081
X
>1YHQ-02082-02081
X
>3CC4-02082-02081
X
>1M90-A51-A50
X
>1VQN-051-050
X
>1JJ2-01854-01853
X
>3CCV-01854-01853
X
>3I56-01854-01853
X
>3G71-01854-01853
X
>3CCM-01854-01853
X
</seq>
<hsp>
0 1:0.289479528096
0 2:0.349735133926
0 3:0.248353109519
0 4:0.356134678821
0 5:0.966219118129
0 6:0.999999704693
0 7:0.985661953891
0 8:0.792748628446
0 9:0.893483045566
1 2:0.32306086853
1 3:0.312666147221
1 4:0.208856026718
1 5:0.765436199929
1 6:0.785481022563
1 7:0.761844181613
1 8:0.586217690616
1 9:0.710184112207
2 3:0.241511934931
2 4:0.345077729416
2 5:0.740314874812
2 6:0.757944187592
2 7:0.749957937262
2 8:0.550062122715
2 9:0.654457727504
3 4:0.242871305931
3 5:0.812036047435
3 6:0.835429146495
3 7:0.823308459388
3 8:0.616429662336
3 9:0.727704339593
4 5:0.695561720799
4 6:0.711357103247
4 7:0.686552765169
4 8:0.494453901927
4 9:0.626048527171
5 6:0.143923604886
5 7:0.174581540785
5 8:0.292966089259
5 9:0.167262574613
6 7:0.0841798693974
6 8:0.247099309442
6 9:0.218220147165
7 8:0.226346306769
7 9:0.223853281345
8 9:0.239291642109
</hsp>