sequences=9
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>1L8V-B111-B110
X
>3OHC-A642-A641
X
>1K8A-A178-A177
X
>1XMQ-A351-A350
X
>2UXC-A351-A350
X
>1XMQ-A691-A690
X
>3OHC-A691-A690
X
>3F2T-X99-X98
X
>3OWZ-A9-A8
X
</seq>
<hsp>
0 1:1.0
0 2:0.438129867798
0 3:0.354766775009
0 4:0.48700424408
0 5:0.842840476594
0 6:0.892165897054
0 7:0.647199327586
0 8:0.860552172944
1 2:0.988964878146
1 3:0.71118085331
1 4:0.62617101301
1 5:0.546269181951
1 6:0.691540463378
1 7:0.562392145316
1 8:0.620567864426
2 3:0.382393904626
2 4:0.408150608949
2 5:0.68693980117
2 6:0.651307371347
2 7:0.538617807838
2 8:0.601939443745
3 4:0.226134209612
3 5:0.527221834809
3 6:0.596814133866
3 7:0.348887054573
3 8:0.562247488077
4 5:0.413139405024
4 6:0.567090384965
4 7:0.255811652356
4 8:0.428044419777
5 6:0.413652255502
5 7:0.427018032639
5 8:0.378213523964
6 7:0.567815883796
6 8:0.404236842804
7 8:0.331974796482
</hsp>