sequences=8
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3OHK-A1258-A1257
X
>3F1F-A1021-A1020
X
>3CCJ-02198-02197
X
>2OTJ-01374-01373
X
>3CC4-01374-01373
X
>2J01-A1583-A1582
X
>3CCS-01576-01574
X
>3G6E-01576-01574
X
</seq>
<hsp>
0 1:0.862791675849
0 2:0.256723522615
0 3:0.222816574053
0 4:0.178918093277
0 5:0.497359269297
0 6:0.830862430432
0 7:0.82489934618
1 2:0.636974732888
1 3:0.999997327594
1 4:0.937476062175
1 5:0.520737816105
1 6:0.874552369095
1 7:0.899221834647
2 3:0.4221222922
2 4:0.352551314133
2 5:0.366879379937
2 6:0.748065940195
2 7:0.750095212698
3 4:0.078239309241
3 5:0.59749941386
3 6:0.80666211983
3 7:0.79754284172
4 5:0.539775858232
4 6:0.761428758738
4 7:0.753322235864
5 6:0.560488575257
5 7:0.571020593246
6 7:0.0451205221416
</hsp>