sequences=16
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3CCL-0245-0244
X
>3CCV-0245-0244
X
>2OTJ-0245-0244
X
>1YJN-0245-0244
X
>3CCQ-0245-0244
X
>2UUB-A1356-A1355
X
>3CME-01572-01571
X
>3KNI-A1565-A1564
X
>1Q82-A1572-A1571
X
>3CMA-01572-01571
X
>1YJN-01572-01571
X
>3CC4-01572-01571
X
>1VQ6-01572-01571
X
>1VQ5-01572-01571
X
>1YIT-01572-01571
X
>3G6E-01572-01571
X
</seq>
<hsp>
0 1:0.128645057812
0 2:0.163739851643
0 3:0.218507811292
0 4:0.191725469457
0 5:0.619050546397
0 6:0.523691784927
0 7:0.953761637755
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0 10:0.824976011361
0 11:0.941271107608
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0 13:0.919479159484
0 14:0.886509626759
0 15:1.0
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1 3:0.146977815318
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1 10:0.775593181485
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1 12:0.864626541227
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1 15:0.952425354621
2 3:0.165396340408
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11 12:0.140452707861
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12 13:0.180076130168
12 14:0.130168370804
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13 14:0.114626685764
13 15:0.18545060377
14 15:0.178695955366
</hsp>