sequences=12
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2J00-A448-A447
X
>2J02-A448-A447
X
>3F1G-A361-A360
X
>3F1F-A1063-A1062
X
>3CCQ-0587-0586
X
>3F1H-A1365-A1364
X
>3R8O-A1242-A1241
X
>2VQE-A1329-A1328
X
>3OLA-B11-B10
X
>1N32-A1329-A1328
X
>3OHK-B49-B48
X
>2J00-A1382-A1381
X
</seq>
<hsp>
0 1:0.00733367549771
0 2:0.429257058985
0 3:0.382080242146
0 4:0.457249486922
0 5:0.608774088653
0 6:0.799724036731
0 7:0.92254366933
0 8:0.599580609463
0 9:0.870644070021
0 10:0.744431524472
0 11:1.0
1 2:0.428075772407
1 3:0.378993110313
1 4:0.457176374403
1 5:0.604693805929
1 6:0.79782939698
1 7:0.920719942246
1 8:0.597997357732
1 9:0.868673336242
1 10:0.741056722875
1 11:0.997986592726
2 3:0.283593735912
2 4:0.174484394949
2 5:0.406784800472
2 6:0.436863129613
2 7:0.546131541591
2 8:0.215647465162
2 9:0.470760857606
2 10:0.42297855025
2 11:0.628135198697
3 4:0.318629351373
3 5:0.273123683004
3 6:0.55738398405
3 7:0.764497602701
3 8:0.3424310542
3 9:0.669519082457
3 10:0.470262958241
3 11:0.738775286369
4 5:0.405156896878
4 6:0.401417783397
4 7:0.584508200174
4 8:0.276023739913
4 9:0.52786104231
4 10:0.47616152705
4 11:0.627660999156
5 6:0.433986474501
5 7:0.691206676039
5 8:0.360835288744
5 9:0.600132453995
5 10:0.348436270487
5 11:0.594816044371
6 7:0.377829603653
6 8:0.310173700117
6 9:0.341254943749
6 10:0.305712361976
6 11:0.291633993974
7 8:0.47895751927
7 9:0.155858872675
7 10:0.455484022063
7 11:0.379699135848
8 9:0.374692912111
8 10:0.267551048378
8 11:0.454258176586
9 10:0.361724403489
9 11:0.329749769642
10 11:0.335531821324
</hsp>