sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>1VQ7-01521-01520
X
>3OHK-A1846-A1821
X
>3KNI-A213-A212
X
>1K9M-A567-A566
X
>1VQ6-0567-0566
X
>1YJW-0567-0566
X
>1VQL-0567-0566
X
>1YIJ-0567-0566
X
>3CPW-0567-0566
X
>3G71-0567-0566
X
</seq>
<hsp>
0 1:0.705099376392
0 2:1.0
0 3:0.737414196836
0 4:0.708381657846
0 5:0.764451237538
0 6:0.652266927911
0 7:0.679023116905
0 8:0.774579362697
0 9:0.725879567651
1 2:0.918265367596
1 3:0.871799197682
1 4:0.603744607679
1 5:0.774176959909
1 6:0.882037384026
1 7:0.751779199566
1 8:0.967381667347
1 9:0.793610436143
2 3:0.623038055226
2 4:0.474230204842
2 5:0.586623973584
2 6:0.69863735009
2 7:0.454354977609
2 8:0.635678317441
2 9:0.633579230449
3 4:0.367214907509
3 5:0.167243597041
3 6:0.261205753123
3 7:0.228554200582
3 8:0.206341964181
3 9:0.149976725692
4 5:0.283156389629
4 6:0.463645155689
4 7:0.222643706266
4 8:0.456829144501
4 9:0.319469280243
5 6:0.365273578251
5 7:0.22701318754
5 8:0.342306413889
5 9:0.166379548558
6 7:0.291063278811
6 8:0.186575161771
6 9:0.228472994089
7 8:0.282907863016
7 9:0.216205766984
8 9:0.234175739463
</hsp>