sequences=12
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3U5H-5468-5522
X
>3U5D-1462-1516
X
>3OXM-B31-B70
X
>3OXE-B31-B70
X
>3OWW-B30-B69
X
>3OWI-B31-B70
X
>3OXE-A31-A70
X
>3OXM-A31-A70
X
>3OWW-A31-A70
X
>3OWZ-A31-A70
X
>3OWZ-B26-B65
X
>3OWI-A31-A70
X
</seq>
<hsp>
0 1:0.427757532165
0 2:0.999988492786
0 3:0.866470723005
0 4:0.858654279754
0 5:0.799244062848
0 6:0.854008240957
0 7:0.81882632944
0 8:0.800114381823
0 9:0.66797778626
0 10:0.748938069997
0 11:0.687118793002
1 2:0.697005323012
1 3:0.633973341973
1 4:0.550680511137
1 5:0.533688433075
1 6:0.65381940704
1 7:0.74297118237
1 8:0.620577160712
1 9:0.7250422962
1 10:0.712360294899
1 11:0.610205341874
2 3:0.326868231323
2 4:0.174676786902
2 5:0.240705535067
2 6:0.316470214785
2 7:0.588331880863
2 8:0.49942270161
2 9:0.801054244031
2 10:0.595703947137
2 11:0.604620174124
3 4:0.243231429088
3 5:0.192391154219
3 6:0.403012888905
3 7:0.636814670761
3 8:0.609507489059
3 9:0.762175988126
3 10:0.539414818485
3 11:0.60553300791
4 5:0.114625335513
4 6:0.329580274627
4 7:0.590431466598
4 8:0.490034759993
4 9:0.758167444343
4 10:0.564354345324
4 11:0.565279582459
5 6:0.282333268569
5 7:0.52739656502
5 8:0.461544087398
5 9:0.686808184833
5 10:0.472152957387
5 11:0.496402863281
6 7:0.290786001967
6 8:0.260525462476
6 9:0.56836915771
6 10:0.31330161763
6 11:0.327016985528
7 8:0.283788626797
7 9:0.371024491628
7 10:0.202831465665
7 11:0.221313825826
8 9:0.55458574731
8 10:0.395425265282
8 11:0.23868482807
9 10:0.3645775155
9 11:0.382317515326
10 11:0.251209707924
</hsp>