sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3KNK-A2770-A2752
X
>2J03-A2742-A2724
X
>2J01-A2742-A2724
X
>3OH7-A2695-A2677
X
>3R8S-A2860-A2842
X
>3R8T-A2859-A2841
X
>3OI1-A2695-A2677
X
>3OH5-A2695-A2677
X
>3OHZ-A2695-A2677
X
>3OHK-A2695-A2677
X
</seq>
<hsp>
0 1:0.557160876567
0 2:0.553463178518
0 3:0.669888808355
0 4:0.999998263399
0 5:0.820998331615
0 6:0.608426778788
0 7:0.648148418074
0 8:0.583896165689
0 9:0.666174333239
1 2:0.0192927135524
1 3:0.326459509375
1 4:0.68310199988
1 5:0.517097124443
1 6:0.329189695609
1 7:0.331202340745
1 8:0.343227509398
1 9:0.375231076537
2 3:0.327763917782
2 4:0.684733755431
2 5:0.520598990814
2 6:0.331874242428
2 7:0.331940964975
2 8:0.345196533581
2 9:0.3770405899
3 4:0.425878063408
3 5:0.274815017593
3 6:0.205578933368
3 7:0.0726487335838
3 8:0.239061298634
3 9:0.211399803247
4 5:0.362305134425
4 6:0.469365599766
4 7:0.435792078141
4 8:0.499365598651
4 9:0.424548221854
5 6:0.29835636656
5 7:0.268487431938
5 8:0.315042459593
5 9:0.23555103093
6 7:0.170990052205
6 8:0.0555751001659
6 9:0.132624933909
7 8:0.195303992121
7 9:0.199572000314
8 9:0.154521566584
</hsp>