sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>1XMQ-A351-A44
X
>1FJG-A351-A44
X
>3R8O-A359-A47
X
>3F1E-A351-A44
X
>3F1G-A351-A44
X
>2J02-A351-A44
X
>3OHC-A351-A44
X
>3OHD-A351-A44
X
>1N32-A351-A44
X
>2UUB-A351-A44
X
</seq>
<hsp>
0 1:0.313147570644
0 2:0.435289960128
0 3:0.691243611261
0 4:0.693280584474
0 5:0.355984918939
0 6:0.424802521463
0 7:0.422479615551
0 8:0.387076770282
0 9:0.27257324738
1 2:0.471455293555
1 3:0.693849976686
1 4:0.698223274954
1 5:0.355641129595
1 6:0.411150815285
1 7:0.38706024726
1 8:0.180772234586
1 9:0.36431425043
2 3:1.0
2 4:0.996380669633
2 5:0.496433601983
2 6:0.632519335306
2 7:0.627885308462
2 8:0.505989407168
2 9:0.368907594956
3 4:0.0317753006923
3 5:0.568575393098
3 6:0.462059147954
3 7:0.455261952099
3 8:0.69233596606
3 9:0.814747454496
4 5:0.565096767723
4 6:0.460523120094
4 7:0.454629710494
4 8:0.692249942939
4 9:0.819039832055
5 6:0.373669374408
5 7:0.36049786385
5 8:0.343558832813
5 9:0.431516706347
6 7:0.0459349465663
6 8:0.431382237444
6 9:0.483707538133
7 8:0.410709819065
7 9:0.474908679232
8 9:0.485006740778
</hsp>