sequences=9
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3CCJ-02251-02171
X
>3CCL-02251-02171
X
>1KD1-A677-A718
X
>1K8A-A677-A718
X
>1Q86-A677-A718
X
>3CXC-0677-0718
X
>3OH5-A1914-A2517
X
>3OH7-A1914-A2517
X
>3G6E-01254-0919
X
</seq>
<hsp>
0 1:0.783019001287
0 2:0.610903582207
0 3:0.65549981234
0 4:0.640465222039
0 5:0.778640619997
0 6:0.847848175528
0 7:0.839271315283
0 8:1.0
1 2:0.592981317715
1 3:0.51300104198
1 4:0.494302878098
1 5:0.427487641281
1 6:0.503499050534
1 7:0.485553541174
1 8:0.775918360409
2 3:0.12600421293
2 4:0.187021574447
2 5:0.339826936883
2 6:0.470473423309
2 7:0.488179324438
2 8:0.661224776089
3 4:0.145901402938
3 5:0.285153770183
3 6:0.452379689453
3 7:0.463309337576
3 8:0.656574677421
4 5:0.268007640024
4 6:0.407612350302
4 7:0.435609680961
4 8:0.611147245863
5 6:0.243196602753
5 7:0.230609566242
5 8:0.65849816558
6 7:0.124898004856
6 8:0.659963129521
7 8:0.713499726804
</hsp>