sequences=8
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3KNH-A857-A225
X
>3F1E-A866-A234
X
>3F1G-A866-A234
X
>3KNH-A375-A348
X
>3R8T-A747-A745
X
>3KNK-A2502-A1990
X
>3R8T-A2710-A2839
X
>3KNI-A200-A216
X
</seq>
<hsp>
0 1:0.0794302855792
0 2:0.0811028575899
0 3:0.0911461128691
0 4:0.889777335075
0 5:0.848373260774
0 6:0.999999211729
0 7:0.921114530301
1 2:0.00710329919193
1 3:0.0699763681069
1 4:0.847050226406
1 5:0.804212654013
1 6:0.961404932663
1 7:0.875951111404
2 3:0.0728225938584
2 4:0.847911039179
2 5:0.804929166368
2 6:0.961725185189
2 7:0.876091427151
3 4:0.827746930687
3 5:0.785103987012
3 6:0.946194542462
3 7:0.862643985111
4 5:0.112309921796
4 6:0.278827925293
4 7:0.16499661789
5 6:0.355394145403
5 7:0.226509029881
6 7:0.149868323165
</hsp>