sequences=6
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3CCJ-02715-01746
X
>3R8T-A2002-A1319
X
>3CCL-0725-02225
X
>1VQ9-0725-02225
X
>1VQ8-0725-02225
X
>3CC4-0725-02225
X
</seq>
<hsp>
0 1:0.986221629766
0 2:0.240704898102
0 3:0.146551707528
0 4:0.182505070974
0 5:0.231434485668
1 2:1.0
1 3:0.95407150941
1 4:0.948867340499
1 5:0.977700711141
2 3:0.1213029048
2 4:0.132051061188
2 5:0.0695317965103
3 4:0.0667726588411
3 5:0.099391735202
4 5:0.0775495915414
</hsp>