sequences=12
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2Y8Y-B9-B8
X
>2J02-A1310-A1213
X
>2J00-A1310-A1213
X
>2UUA-A1310-A1213
X
>1N32-A1310-A1213
X
>1XMQ-A1305-A1208
X
>2VQF-A1310-A1213
X
>3R8N-A1332-A1235
X
>2VQE-A1310-A1213
X
>2UUB-A1310-A1213
X
>2UXC-A1310-A1213
X
>1FJG-A1310-A1213
X
</seq>
<hsp>
0 1:0.992151612204
0 2:0.992546483937
0 3:0.984124551694
0 4:0.99166816926
0 5:0.989273690073
0 6:0.993939381851
0 7:0.938006516936
0 8:1.0
0 9:0.993122219945
0 10:0.996422878133
0 11:0.99685560472
1 2:0.0059877039827
1 3:0.10278769881
1 4:0.106230963201
1 5:0.0975494161407
1 6:0.101615271655
1 7:0.146160981239
1 8:0.126614307046
1 9:0.0988914749969
1 10:0.113491882867
1 11:0.132053232844
2 3:0.103640500561
2 4:0.107283377381
2 5:0.0980410779208
2 6:0.101689048174
2 7:0.146124596408
2 8:0.126848709064
2 9:0.0975921139854
2 10:0.113460621038
2 11:0.131382795757
3 4:0.0283200188089
3 5:0.036048649785
3 6:0.0546053279229
3 7:0.0808339137224
3 8:0.0615450987575
3 9:0.0529925522488
3 10:0.0552586208804
3 11:0.0476102692509
4 5:0.0497312067302
4 6:0.0542243533337
4 7:0.0827839517414
4 8:0.0597175866531
4 9:0.0535531348049
4 10:0.0358289570105
4 11:0.0489206220473
5 6:0.0352177959887
5 7:0.100395622293
5 8:0.0480937401259
5 9:0.0608202614284
5 10:0.0659576145887
5 11:0.0635767246749
6 7:0.101789702641
6 8:0.0276432481966
6 9:0.0569160138922
6 10:0.0508702833659
6 11:0.0704172346732
7 8:0.105662552298
7 9:0.0804782550538
7 10:0.0819141023293
7 11:0.0774628988004
8 9:0.0683650795357
8 10:0.0547369973137
8 11:0.0686842526921
9 10:0.0443639874337
9 11:0.0458826877156
10 11:0.0526065648439
</hsp>