sequences=11
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3F1G-A1259-A1235
X
>3R8O-A949-A968
X
>3F1E-A1259-A1235
X
>3KNK-A479-A690
X
>1N32-A1259-A1235
X
>2UXC-A1259-A1235
X
>2UUB-A1259-A1235
X
>2VQE-A1259-A1235
X
>1XMQ-A1254-A1230
X
>2UUA-A1259-A1235
X
>1FJG-A1259-A1235
X
</seq>
<hsp>
0 1:1.0
0 2:0.00413274513904
0 3:0.952369045295
0 4:0.212195239871
0 5:0.109406160384
0 6:0.0962741226535
0 7:0.174228616931
0 8:0.0956405568678
0 9:0.139088719028
0 10:0.131688761757
1 2:0.999372001017
1 3:0.137069496591
1 4:0.993868202437
1 5:0.966947908269
1 6:0.977048157709
1 7:0.997483371137
1 8:0.96565219021
1 9:0.94913385513
1 10:0.968592664438
2 3:0.951775997892
2 4:0.212372567828
2 5:0.109681361865
2 6:0.0948424903527
2 7:0.174261140761
2 8:0.0951445155546
2 9:0.13853540619
2 10:0.130383559803
3 4:0.93213928435
3 5:0.915050799823
3 6:0.923043429072
3 7:0.942297963556
3 8:0.913211043465
3 9:0.898554270084
3 10:0.916882963938
4 5:0.158877942813
4 6:0.180649788094
4 7:0.0724037781604
4 8:0.158198790014
4 9:0.219891936524
4 10:0.187379758994
5 6:0.0784348739536
5 7:0.108970216549
5 8:0.0458124499725
5 9:0.0824463498455
5 10:0.0682109557058
6 7:0.145726764162
6 8:0.0530449536024
6 9:0.0806240074702
6 10:0.0627495987937
7 8:0.11457877185
7 9:0.174407547924
7 10:0.136338316185
8 9:0.077583720602
8 10:0.0647737927908
9 10:0.0648187711043
</hsp>