sequences=11
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2UUB-A110-A280
X
>2VQE-A110-A280
X
>1VQ5-02702-02568
X
>2UUA-A110-A280
X
>2VQF-A110-A280
X
>3R8N-A120-A288
X
>3R8O-A120-A288
X
>2QA4-02701-02567
X
>2UXC-A110-A280
X
>1N32-A110-A280
X
>1FJG-A110-A280
X
</seq>
<hsp>
0 1:0.310653453996
0 2:0.902321422336
0 3:0.157196814632
0 4:0.224877156063
0 5:0.498331734318
0 6:0.379506616552
0 7:0.916376227389
0 8:0.182519140314
0 9:0.176946205343
0 10:0.261501646471
1 2:1.0
1 3:0.258417031597
1 4:0.122975784623
1 5:0.468985863747
1 6:0.547138539641
1 7:0.958620832003
1 8:0.301179816068
1 9:0.276509093634
1 10:0.31925413075
2 3:0.900981414581
2 4:0.975995735508
2 5:0.832146835959
2 6:0.635393945438
2 7:0.41471027347
2 8:0.830349624886
2 9:0.853893173537
2 10:0.850162715712
3 4:0.212760724097
3 5:0.466394828933
3 6:0.394479070409
3 7:0.895232117355
3 8:0.102217493806
3 9:0.135249162863
3 10:0.153234305113
4 5:0.4213655994
4 6:0.468846119565
4 7:0.939706021696
4 8:0.252300311638
4 9:0.202522963945
4 10:0.284212580892
5 6:0.39953483231
5 7:0.666403753455
5 8:0.450310367023
5 9:0.397614947795
5 10:0.43356779957
6 7:0.661417617945
6 8:0.338900441977
6 9:0.326088453903
6 10:0.363520143547
7 8:0.845796509471
7 9:0.853430630833
7 10:0.845231801106
8 9:0.0931547000447
8 10:0.099259829155
9 10:0.136541346836
</hsp>