sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2J03-A1483-A1482
X
>2J01-A1483-A1482
X
>2UXC-A1252-A1258
X
>3F1F-A667-A2334
X
>3R8N-A1274-A1280
X
>3F1H-A667-A2334
X
>2VQF-A1252-A1258
X
>2UUA-A1252-A1258
X
>2VQE-A1252-A1258
X
>1FJG-A1252-A1258
X
</seq>
<hsp>
0 1:0.00140362890368
0 2:0.447100580857
0 3:0.999536444992
0 4:0.41122836052
0 5:0.999997883228
0 6:0.47419728862
0 7:0.356461609741
0 8:0.408149502364
0 9:0.363327411979
1 2:0.447169804308
1 3:0.99933751836
1 4:0.411438667757
1 5:0.999797467861
1 6:0.47412157839
1 7:0.356608840476
1 8:0.408176067576
1 9:0.363461687596
2 3:0.774367318273
2 4:0.104432391331
2 5:0.775425334791
2 6:0.0783593490055
2 7:0.121646339463
2 8:0.0836028101956
2 9:0.130945287456
3 4:0.818455962202
3 5:0.00432654858023
3 6:0.736366010671
3 7:0.82254598301
3 8:0.777107948653
3 9:0.823932089253
4 5:0.819842613799
4 6:0.172528177056
4 7:0.115798447804
4 8:0.131874593839
4 9:0.0825442118459
5 6:0.737165438611
5 7:0.823368892193
5 8:0.777843154962
5 9:0.824999722219
6 7:0.158283456408
6 8:0.0911266176874
6 9:0.174581859579
7 8:0.0723909204578
7 9:0.0701495487963
8 9:0.103048978329
</hsp>